Having lied to her father about joining the cheerleaders, Claire decides the time has come to teach the team captain a lesson when she is told that she didn’t make the squad. Having convinced Monica to come to New York, Dr. Suresh isn’t at all comfortable when the Company asks him use her as a guinea pig for a variant of the vaccine. The Company backs down but he learns that Niki Sanders has been assigned to work with him. Alejandro and Maya make it to the US border only to be stopped by a citizens border patrol unit.
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Afraid of losing the love he thinks he’s found, Peter denies his past and doesn’t look in the box while an unknown woman tries to track him down. Parkman and Nathan are led to Philadelphia to track down Matt’s father, unknowingly being led into a trap where Nathan stumbles into the city that blew up after all. Mohindar takes Molly to the Company in search of help for her, just as Nikki shows up, while another hero begins to discover her powers in Texas
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Micah warms his way into his cousin’s heart by using his powers. Matt gets closer to finding some answers surrounding the mysterious mark on Hiro’s father’s photo and asks Molly to help him. Nathan’s mother confesses to killing Hiro’s father, and Claire grows closer to the classmate who can fly.
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Now back from Haiti, Dr. Suresh finds that his new lab in New York is Isaac Mendez’s old loft. He finds the 8th of Isaac’s paintings but it holds bad news for a major character. Claire is concerned that her classmate will reveal her secret but he reveals a secret of his own. Peter Petrelli assists his newfound friends and begins to question whether he wants to know his identity and his past. Still in 17th century Japan, Hiro forces the issue with Takezo Kensei in order to ensure that he lives up to his legendary status. Niki Sanders travels to New Orleans to leave Micah with a relative. Maya and her brother reach Mexico, but she has to get him out of jail.
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At the behest of his new employers, Dr. Suresh travels to Haiti to treat a potential virus victim. The patient turns out to be a familiar face. Claire’s secret may be out when a fellow student sees her regenerate a limb; that student may have his own secret however. Matt Parkman investigates a murder that affects one one of the Heroes. In 17th century Japan, Hiro is doing his best to ensure that Takezo Sensei lives up to his reputation. He has to take things into his own hands however.
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Four months after the events of Peter’s explosion, we find the heroes at different places in their lives. Claire, HRG and family try to stay below the radar in their new town, but a classmate of Claire’s with some powers of his own knows there’s something different about her. Matt Parkman and Mohinder Suresh are now guardians of Molly Parker, who has been suffering from horrible nightmares about the man who is more evil than Sylar.
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Can Sylar be stopped? Will Linderman’s vision live on with Nathan? What will it take for Peter to save the world, what sacrifices will be made? With all the horrible predictions unfolding before them the heroes face moments of pain and peril in Kirby Plaza.
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Peter feels the need to control his newly absorbed power, as he overhears Sylar’s thoughts on the streets of New York. Mohinder finds another hero and agrees to help find a cure for her fatal disease, as Parkman and Bennet close in on the building they are in, looking for a link that could set them free. Nikki/Jessica and DL are convinced that Linderman is behind their son’s disappearance, as Linderman convinces their son to do a job for him.
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Hiro and Ando return from the future, and start looking for Mr. Isaac. Bennet, Parkman and Sprague are on their way to New York. Peter tries to convince Claire not to go to Paris, but this gets much harder when she sees Thompson with Nathan
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This episode takes us five years into the future with Hiro and Ando. We meet a brunette Claire Bennet, a “very different” Matt Parkman, and a Niki/Jessica that have combined into one individual.
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After “helping” Suresh search for more people with special abilities, Sylar’s rampage continues with two “heroes” being confronted by the stronger-powered serial killer. Nathan must factor what he’s learned from Linderman into difficult decisions that will shape the future — for him, his family, New York City and the world. As Thompson uses every tool at his disposal to find Claire, Linderman drafts Jessica into his far-reaching plans. Meanwhile, Hiro’s resolve to “save the world” strengthens in the face of a grim reality.
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With the election and NYC’s destruction looming, Nathan has a disturbing face-to-face meeting with the shadowy Linderman. Hiro’s attempt to steal the sword steers him into a grim new direction. Suresh makes a breakthrough on “the list” — at great cost. D.L. begins to suspect all is not well at home. Isaac paints his most terrible painting yet. New “hero” Candice Wilmer makes an illusive debut.
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H.R.G.’s past catches up to him as Matt and Ted Sprague, come to Texas looking for answers, and take him, his wife, son and Claire hostage — leading to a tragic, explosive showdown.
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Peter painfully learns that someone close may have betrayed him and Claude. Matt’s world spirals out of control when radioactive man Ted Sprague and Hana Gitelman, a fierce young woman with “wireless” mental abilities, drop into his life. After blood is spilled, Hiro makes a difficult decision about his mission. Claire is unable to contain her anger at her father.
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While the scandalous truth about Claire’s real father is revealed, her adoptive mother faces a crisis. Matt takes a job as a bodyguard for a crooked attorney, which puts him in the cross hairs of Linderman’s new assassin. Hiro and Ando return to Las Vegas to find the sword, but get sidetracked by a damsel in distress. Suresh finds someone on the list and unknowingly puts himself in grave danger. Meanwhile, Simone turns to some unlikely help in her and Nathan’s struggle to find Peter.
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